CESSHIV-1 database

General information on HIV-1 isolate

# 1989

Accession number	AY118156
Name	94LB12
Subtype	CRF02_AG
Country	Liberia
Sampling year	1994
Patient	LB12

AY118156 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096633(#1914) AF096636(#1917) AF196743(#1309) AY118161(#1992) AY932653(#2123)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy