CESSHIV-1 database

General information on HIV-1 isolate

# 2123

Accession number	AY932653
Name	TZLM618
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	618

AY932653 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096633(#1914) AF096636(#1917) AF196743(#1309) AY118156(#1989) AY118161(#1992)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy