CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1992
Accession number AY118161
Name 93CB76
SubtypeCRF02_AG
CountryCaribbean
Sampling year 1993
Patient93CB76

AY118161 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096633(#1914) AF096636(#1917) AF196743(#1309) AY118156(#1989) AY932653(#2123)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy