CESSHIV-1 database

General information on HIV-1 isolate

# 944

Accession number	AB286854
Name	p0303GH195AG/06_48
Subtype	0206
Country	Ghana
Sampling year	2003
Patient	195

AB286854 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggactcggc ttgctgaagt gcacacagca agaggcgaga g-cggcgactg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AB286853(#943) AB286863(#919)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy