CESSHIV-1 database

General information on HIV-1 isolate

# 957

Accession number	AB289587
Name	p00JPDR2508B39
Subtype	B
Country	Japan
Sampling year	2000
Patient	2508

AB289587 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg tgcacggcaa gaggcgaggg gcggcgaacg gtgagtacgc caat--ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy