CESSHIV-1 database

General information on HIV-1 isolate

# 960

Accession number	AB289589
Name	p01JPDR3884B08
Subtype	B
Country	Japan
Sampling year	2001
Patient	388

AB289589 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaac-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy