CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3300
Accession number AB371838
Name JRC28
SubtypeCRF01_AE
CountryJapan
Submitted to NCBI 2007

AB371838 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgytgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc att--ttttgac tagcggaggc tagaaggaga ga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012