CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3485
Accession number AB371841
Name JRC31
SubtypeCRF01_AE
CountryJapan
Submitted to NCBI 2007

AB371841 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacgcagcaa gaggcgagag cggcgaactg gtgagtacgc caaa--ttttga ctagcggagg ctagaaggag aga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012