CESSHIV-1 database

General information on HIV-1 isolate

# 2664

Accession number	AB485655
Name	NP03
Subtype	CRF01_AE
Country	Thailand
Submitted to NCBI	2009
Patient	NP03

AB485655 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagga gcggcgactg gtgagtacgc caaa--ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AB052601(#1057) AB485654(#2734)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy