CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 50
Accession number AF005495
Name 93BR029_4
SubtypeBF1
CountryBrazil
Sampling year 1993
PatientBR029

AF005495 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcag gaggcgaggg gcggcgactg gtgagtacgc caaaaataaa atttggacta gcggaggcta gaaggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012