CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 67
Accession number AF076475
Name VI1126
SubtypeF2KU
CountryBelgium (DRC)
Sampling year 1994
PatientVI1126

AF076475 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacagcaa gaggcgaggc ggcggcgact ggtgagtacg ccatt--ttttg actagcggag gctagaagga gaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy