CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 73
Accession number AF077336
Name VI850
SubtypeF1
CountryBelgium (DRC)
Sampling year 1993
PatientVI850

AF077336 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggactcggc ttgctgaagt gcaacacggc aagaggcgag ag-cggcgact ggtgagtacg ccgaattttt tttttgacta gcggaggcta gaaggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy