CESSHIV-1 database

General information on HIV-1 isolate

# 139

Accession number	AF110973
Name	C-96BW15B03
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW15

AF110973 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtaccca aattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy