CESSHIV-1 database

General information on HIV-1 isolate

# 145

Accession number	AF110979
Name	C-96BW17A09
Subtype	C
Country	Botswana
Sampling year	1996
Patient	BW17

AF110979 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggacttggct tgctgaagtg cactcggcag gaggcgagag -cggcggctgg cgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy