CESSHIV-1 database

General information on HIV-1 isolate

# 1485

Accession number	AF254696
Name	NT27_1
Subtype	D
Country	Tanzania
Sampling year	1996
Patient	27

AF254696 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcaacgaacg gtgagtacgc tgaaattttt gactagcgga ggctagaagg agag

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy