CESSHIV-1 database

General information on HIV-1 isolate

# 1516

Accession number	AF254729
Name	G2_13
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	2

AF254729 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagag

Isolates with identical sequences of region:

AF254684(#1474) AF254711(#1499) AF254719(#1507)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy