CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 96
Accession number AF286223
Name 94IN476
SubtypeC
CountryIndia
Sampling year 1994
Patient476

AF286223 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcagcaa gaggcgaggg g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012