CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 106
Accession number AF286233
Name 98IS002
SubtypeC
CountryIsrael
Sampling year 1998
PatientIS002

AF286233 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctaaagtg cacttggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012