CESSHIV-1 database

General information on HIV-1 isolate

# 1404

Accession number	AF286250
Name	CY042GAG, 94CY042_2G
Subtype	A2
Country	Cyprus
Sampling year	1994
Patient	CY042

AF286250 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagga gcggcgactg gtgagtacgc ctaacatttt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy