CESSHIV-1 database

General information on HIV-1 isolate

# 343

Accession number	AF407418
Name	VAU
Subtype	Group O
Country	France
Sampling year	1992
Patient	VAU

AF407418 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacccgctaa gaggcgagag gaactcacaa gagggtgagt ----aattttg-ctg gcggtggcca gacctagggg aagggcgaag tctctagggg aggaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy