CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 342
Accession number AF407419
Name VAU
SubtypeGroup O
CountryFrance
Sampling year 1992
PatientVAU

AF407419 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

aggctcggct tagcggagtg cacccgctaa gaggcaagaa gaactcacaa gaaagtaagt ----aattttg-ctg gcagtggcca gacctagagg aaaggcgaag tctctaaaag aagaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012