CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 222
Accession number AF423757
Name X421
SubtypeCRF14_BG
CountrySpain
Sampling year 1999
PatientX421

AF423757 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcacacagca agaggcgaga g-cggc---tggtg agtacgccat aaattttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AF423758(#223) AF450096(#218)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy