CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 224
Accession number AF423759
Name X477
SubtypeCRF14_BG
CountrySpain
Sampling year 2000
PatientX477

AF423759 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcacacagca agaggcgaga g-cggcggctg gtgagtacgc cataaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

FJ670524(#3174) FJ670528(#3241)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy