CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3884
Accession number AF442565
Name TZBFL0025
SubtypeA1D
CountryTanzania
Sampling year 1996
Patient25

AF442565 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggacccggct tgcctgaagc gcgcacggca agaggcgggg ggcagcggac ggtgagtacg caaaaatttt tgactagcag aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy