CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 176
Accession number AF443078
Name 98BWMC14.a3
SubtypeC
CountryBotswana
Sampling year 1998
PatientMC14A

AF443078 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgagg gggcggcgga ctggtgagta cgccgaattt tatttgacta gcggaggcta gaaggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012