CESSHIV-1 database

General information on HIV-1 isolate

# 177

Accession number	AF443079
Name	98BWMO14.10
Subtype	C
Country	Botswana
Sampling year	1998
Patient	MO1410

AF443079 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttttta tttgactagc ggaggctaga aggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy