CESSHIV-1 database

General information on HIV-1 isolate

# 187

Accession number	AF443089
Name	00BW0768.20
Subtype	C
Country	Botswana
Sampling year	2000
Patient	76820

AF443089 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacttggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcag aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy