CESSHIV-1 database

General information on HIV-1 isolate

# 188

Accession number	AF443090
Name	00BW0874.21
Subtype	C
Country	Botswana
Sampling year	2000
Patient	87421

AF443090 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aattttattt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy