CESSHIV-1 database

General information on HIV-1 isolate

# 209

Accession number	AF443111
Name	00BW3876.9
Subtype	C
Country	Botswana
Sampling year	2000
Patient	3876

AF443111 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag --ggcgactggc gagtacgcca aaaaaatttt tttgactagc ggaggctaga aggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy