CESSHIV-1 database

General information on HIV-1 isolate

# 212

Accession number	AF443114
Name	00BW3970.2
Subtype	C
Country	Botswana
Sampling year	2000
Patient	3970

AF443114 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggcc tgctgaagtg cactcggcag gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy