CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 214
Accession number AF460972
Name 96CM-1849
SubtypeCRF13_cpx
CountryCameroon
Sampling year 1996
Patient1849

AF460972 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gcgc gcacagcaag aggcgagggg cggcggctgg tgagtacgcc aaaaattttt tgactagtgg aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012