CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 216
Accession number AF492623
Name 96CM-4496
SubtypeCRF11_cpx
CountryCameroon
Sampling year 1996
Patient4496

AF492623 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgttgaggtg cacacagcaa gaggcgagag -cggcgattgg tgagtacgcc aaaaattttt tgactagcgg aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012