CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1412
Accession number AJ276596
Name VI1197
SubtypeA1G
CountryBelgium
Sampling year 1994
PatientVI1197

AJ276596 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcacacagca agaggcgaga gcggcgcact ggtgagtacg ccaat--ttttg actagcggag gctagaagga gaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy