CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1413
Accession number AJ293865
Name B76
Subtype06A1
CountryBenin
Submitted to NCBI 2000
PatientB76

AJ293865 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gtgc acgcagcaag aggcgaggcg gccggcgact ggtgagtacg ccaaaaattt tttgactagc ggaggctaga aggagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012