CESSHIV-1 database

General information on HIV-1 isolate

# 252

Accession number	AY158534
Name	98ZA502 clone 3
Subtype	C
Country	South Africa
Sampling year	1998
Patient	502

AY158534 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcggctg gtgagtacgc caatttttat ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

FJ496185(#1543) FJ496186(#2641) FJ496187(#2642) FJ496188(#2643) FJ496189(#2644) FJ496190(#2645) FJ496191(#2646) FJ496192(#2647) FJ496193(#2648) FJ496194(#2649)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy