CESSHIV-1 database

General information on HIV-1 isolate

# 3218

Accession number	AY161881
Name	00PTHDF2
Subtype	B
Country	Portugal
Sampling year	2000

AY161881 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcggctg gtgagtacgc caaaactttt gactagcgga ggctagaagg gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy