CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3222
Accession number AY161883
Name 00PTHSM5
SubtypeCRF14_BG
CountryPortugal
Sampling year 2000
PatientTHSM5

AY161883 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaggt gcacacagca agaggcgaga g-cggcgactg gtgggtaccc cataaatttt gactagcgga ggctagaagg agaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012