CESSHIV-1 database

General information on HIV-1 isolate

# 3220

Accession number	AY161890
Name	00PTHDE15
Subtype	B
Country	Portugal
Sampling year	2000

AY161890 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caa---ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

EU786676(#1189)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy