CESSHIV-1 database

General information on HIV-1 isolate

# 299

Accession number	AY169804
Name	98CMABB212
Subtype	Group O
Country	Cameroon
Sampling year	1998
Patient	212

AY169804 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacctgctaa gaggcgag-----ag gaactcacaa gagggtgagt aaatttgctg gcggtggcca gacctagggg aagggcgaag tccctagggg aggaa

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy