CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 307
Accession number AY169814
Name 99USTWLA
SubtypeGroup O
CountryUSA
Sampling year 1999
PatientTWLA

AY169814 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

aggctcggct tagcggagtg cacccgctaa gaggcgagag ga----actcacga gaaggtgagt aaatttg-ctg gcggtggcca gacctagggg aagggcgaag tccctagagg aagaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012