CESSHIV-1 database

General information on HIV-1 isolate

# 309

Accession number	AY169816
Name	98CMA105
Subtype	Group O
Country	Cameroon
Sampling year	1998
Patient	105

AY169816 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacccgctaa gaggcgag-----ag gagctcacag agggtgagta attttg-ctgg cggtggccag acctagggga agggcgaagt ctctagggga ggaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy