CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 250
Accession number AY173958
Name BZ163
SubtypeF1
CountryBrazil
Sampling year 1989
PatientBZ163

AY173958 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgaggg g-ggcgactgg tgagtacgcc aaa--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AB485656(#2747) AB485657(#2748)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy