CESSHIV-1 database

General information on HIV-1 isolate

# 310

Accession number	AY228557
Name	01ZATM45
Subtype	C
Country	South Africa
Sampling year	2001
Patient	TM45

AY228557 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgcttaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy