CESSHIV-1 database

General information on HIV-1 isolate

# 349

Accession number	AY314044
Name	WC10P-1
Subtype	B
Country	Canada
Sampling year	1996
Patient	WC10

AY314044 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY314046(#351) AY314048(#353) AY314051(#356) AY314052(#357) AY314056(#361) AY314059(#364) AY314061(#366) AY314063(#368)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy