CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 293
Accession number AY423387
Name 671-00T36
SubtypeB
CountryNetherlands
Sampling year 2000
PatientH671

AY423387 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagaa gaagcgcgcg cggcaagagg cgaggggcgg cgactggtga gtacgcctaa aaattttgac tagcggaggc tagaaggaga ga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012