CESSHIV-1 database

General information on HIV-1 isolate

# 399

Accession number	AY455782
Name	99UFRJ-16
Subtype	CRF46_BF
Country	Brazil
Sampling year	1999
Patient	RJ16

AY455782 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcacacggca agaggcgaga g-cggcggctg gtgagtacgc caaa--ttttga ctagcagagg ctagaaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy