CESSHIV-1 database

General information on HIV-1 isolate

# 316

Accession number	AY463218
Name	C.ZA.1176MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1176MB

AY463218 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt tgactagcgg tggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy