CESSHIV-1 database

General information on HIV-1 isolate

# 317

Accession number	AY463219
Name	C.ZA.1192M3M
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1192M

AY463219 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt tgactagcgg aggctagaaa gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy