CESSHIV-1 database

General information on HIV-1 isolate

# 318

Accession number	AY463220
Name	C.ZA.1195MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1195M

AY463220 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy