CESSHIV-1 database

General information on HIV-1 isolate

# 320

Accession number	AY463222
Name	C.ZA.1228MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1228MB

AY463222 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagcg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy